Publications
Built upon decades of research
CapyBio’s platform builds on a foundation of landmark studies in single-cell genomics and cell identity engineering.
CapyBio’s Cell Engineering Platform
Single-cell lineage capture across genomic modalities with CellTag-multi reveals fate-specific gene regulatory changes
Jindal et al. Nature Biotechnology (2024)
Dissecting cell identity via network inference and in silico gene perturbation
Kamimoto et al. Nature (2023)
Capybara: A computational tool to measure cell identity and fate transitions
Kong et al. Cell Stem Cell (2022)
Selected Publications
Comparative single-cell lineage tracing identifies distinct adipocyte precursor dynamics in skin and inguinal fat
Rivera-Gonzalez and Butka et al. Cell Stem Cell (2025)
Gene regulatory network reconfiguration in direct lineage reprogramming
Kamimoto et al. Stem Cell Reports (2023)
Single-cell mapping of lineage and identity in direct reprogramming
Biddy et al. Nature (2018)
Dissecting engineered cell types and enhancing cell fate conversion via CellNet
Morris, Cahan, and Li et al (2015)
CellNet: network biology applied to stem cell engineering
Cahan, Morris, and Li et al. Cell (2014)